| Mannschaft | Spiele | gew. | unent. | verl. | Tore | Torv. | Punkte | veränd. |
| 1. 1.FC Köln | 21 | 14 | 5 | 2 | 46:16 | + 30 | 47 |  |
| 2. VfL Bochum | 21 | 11 | 3 | 7 | 35:30 | + 5 | 36 | |
| 3. FC Energie Cottbus | 21 | 11 | 1 | 9 | 41:27 | + 14 | 34 | |
| 4. 1.FC Nürnberg | 21 | 9 | 5 | 7 | 32:35 | - 3 | 32 |  |
| 5. Borussia Mönchengladbach | 21 | 8 | 7 | 6 | 32:25 | + 7 | 31 |  |
| 6. Tennis Borussia Berlin | 21 | 7 | 10 | 4 | 28:23 | + 5 | 31 | |
| 7. Alemannia Aachen | 21 | 8 | 7 | 6 | 31:35 | - 4 | 31 | |
| 8. Waldhof Mannheim | 21 | 7 | 8 | 6 | 30:29 | + 1 | 29 | |
| 9. Chemnitzer FC | 21 | 7 | 7 | 7 | 29:26 | + 3 | 28 | |
| 10. FSV Mainz 05 | 21 | 6 | 9 | 6 | 23:25 | - 2 | 27 | |
| 11. Rot-Weiß Oberhausen | 21 | 6 | 9 | 6 | 19:21 | - 2 | 27 | |
| 12. SpVgg. Greuther Fürth | 21 | 5 | 10 | 6 | 16:22 | - 6 | 25 | |
| 13. Hannover 96 | 21 | 6 | 6 | 9 | 30:31 | - 1 | 24 | |
| 14. FC St.Pauli | 21 | 5 | 9 | 7 | 22:27 | - 5 | 24 | |
| 15. Stuttgarter Kickers | 21 | 5 | 6 | 10 | 30:39 | - 9 | 21 | |
| 16. Kickers Offenbach |
21 | 4 |
9 | 8 |
21:32 |
- 11 |
21 | |
| 17. Fortuna Köln | 21 | 4 | 8 | 9 | 19:31 | - 12 | 20 | |
| 18. Karlsruher SC | 21 | 2 | 9 | 10 | 24:34 | - 10 | 15 | |
Ergebnisse 1999/2000