| Mannschaft | Spiele | gew. | unent. | verl. | Tore | Torv. | Punkte | veränd. |
| 1. 1.FC Köln | 24 | 15 | 6 | 3 | 48:21 | + 27 | 48 |  |
| 2. VfL Bochum | 24 | 13 | 4 | 7 | 40:33 | + 7 | 43 | |
| 3. FC Energie Cottbus | 24 | 13 | 2 | 9 | 45:29 | + 16 | 41 | |
| 4. Borussia Mönchengladbach | 24 | 10 | 8 | 6 | 39:29 | + 10 | 38 | |
| 5. Tennis Borussia Berlin | 24 | 9 | 10 | 5 | 33:27 | + 6 | 37 |  |
| 6. 1.FC Nürnberg | 23 | 10 | 6 | 7 | 38:37 | + 1 | 36 | |
| 7. Alemannia Aachen | 24 | 9 | 9 | 6 | 34:37 | - 3 | 36 |  |
| 8. Waldhof Mannheim | 24 | 8 | 10 | 6 | 34:32 | + 2 | 34 | |
| 9. FSV Mainz 05 | 24 | 7 | 10 | 7 | 31:29 | + 2 | 31 | |
| 10. Rot-Weiß Oberhausen | 24 | 7 | 9 | 8 | 24:26 | - 2 | 30 | |
| 11. SpVgg. Greuther Fürth | 24 | 6 | 11 | 7 | 24:28 | - 4 | 29 | |
| 12. Chemnitzer FC | 23 | 7 | 7 | 9 | 30:33 | - 3 | 28 | |
| 13. Hannover 96 | 24 | 7 | 7 | 10 | 34:38 | - 4 | 28 | |
| 14. FC St.Pauli | 24 | 6 | 10 | 8 | 25:30 | - 5 | 28 | |
| 15. Kickers Offenbach |
24 | 5 |
9 | 10 |
23:35 |
- 12 |
24 | |
| 17. Fortuna Köln | 24 | 4 | 10 | 10 | 21:34 | - 13 | 22 | |
| 16. Stuttgarter Kickers | 24 | 5 | 6 | 13 | 32:47 | - 15 | 21 | |
| 18. Karlsruher SC | 24 | 3 | 10 | 11 | 28:38 | - 10 | 19 | |
Ergebnisse 1999/2000