| Mannschaft | Spiele | gew. | unent. | verl. | Tore | Torv. | Punkte | veränd. |
| 1. 1.FC Köln | 30 | 18 | 8 | 4 | 59:31 | + 28 | 59 |  |
| 2. VfL Bochum | 30 | 16 | 6 | 8 | 58:43 | + 15 | 54 | |
| 3. FC Energie Cottbus | 30 | 14 | 4 | 12 | 52:37 | + 15 | 46 | |
| 4. 1.FC Nürnberg | 30 | 12 | 10 | 8 | 46:43 | + 3 | 46 |  |
| 5. Borussia Mönchengladbach | 30 | 11 | 12 | 7 | 50:39 | + 11 | 45 |  |
| 6. Alemannia Aachen | 30 | 12 | 9 | 9 | 42:45 | - 3 | 45 | |
| 7. Hannover 96 | 30 | 12 | 7 | 11 | 50:47 | + 3 | 43 | |
| 8. Waldhof Mannheim | 30 | 9 | 13 | 8 | 45:45 | - 0 | 42 | |
| 9. Tennis Borussia Berlin | 30 | 10 | 10 | 10 | 39:42 | - 3 | 40 | |
| 10. Rot-Weiß Oberhausen | 30 | 9 | 12 | 9 | 33:31 | + 2 | 39 | |
| 11. SpVgg. Greuther Fürth | 30 | 8 | 15 | 7 | 34:35 | - 1 | 39 | |
| 12. FSV Mainz 05 | 30 | 8 | 12 | 10 | 36:35 | + 0 | 36 | |
| 13. Chemnitzer FC | 30 | 9 | 9 | 12 | 38:43 | - 5 | 36 | |
| 14. FC St.Pauli | 30 | 7 | 14 | 9 | 29:34 | - 5 | 35 | |
| 15. Stuttgarter Kickers | 30 | 9 | 7 | 14 | 44:51 | - 7 | 34 | |
| 16. Kickers Offenbach |
30 | 7 |
11 | 12 |
30:49 |
- 19 |
32 | |
| 17. Fortuna Köln | 30 | 5 | 11 | 14 | 28:45 | - 17 | 26 | |
| 18. Karlsruher SC | 30 | 4 | 11 | 15 | 32:49 | - 17 | 23 | |
Ergebnisse 1999/2000