| Mannschaft | Spiele | gew. | unent. | verl. | Tore | Torv. | Punkte | veränd. |
| 1. 1.FC Köln | 32 | 19 | 8 | 5 | 62:34 | + 28 | 62 |  |
| 2. VfL Bochum | 32 | 17 | 6 | 9 | 59:44 | + 15 | 57 | |
| 3. FC Energie Cottbus | 32 | 16 | 4 | 12 | 58:41 | + 17 | 52 | |
| 4. Borussia Mönchengladbach | 32 | 13 | 12 | 7 | 53:40 | + 13 | 51 |  |
| 5. 1.FC Nürnberg | 32 | 13 | 10 | 9 | 49:44 | + 5 | 49 |  |
| 6. Rot-Weiß Oberhausen | 32 | 11 | 12 | 9 | 39:33 | + 6 | 45 | |
| 7. Alemannia Aachen | 32 | 12 | 9 | 11 | 44:49 | - 5 | 45 | |
| 8. Hannover 96 | 32 | 12 | 7 | 13 | 52:51 | + 1 | 43 | |
| 9. FSV Mainz 05 | 32 | 10 | 12 | 10 | 39:36 | + 3 | 42 | |
| 10. SpVgg. Greuther Fürth | 32 | 9 | 15 | 8 | 36:37 | - 1 | 42 | |
| 11. Waldhof Mannheim | 32 | 9 | 13 | 10 | 49:51 | - 2 | 42 | |
| 12. Chemnitzer FC | 32 | 10 | 10 | 12 | 40:44 | - 4 | 40 | |
| 13. Tennis Borussia Berlin | 32 | 10 | 10 | 12 | 41:46 | - 5 | 40 | |
| 14. FC St.Pauli | 32 | 8 | 14 | 10 | 33:38 | - 5 | 38 | |
| 15. Stuttgarter Kickers | 32 | 9 | 8 | 15 | 46:56 | - 10 | 35 | |
| 16. Kickers Offenbach |
32 | 8 |
11 | 13 |
33:52 |
- 19 |
35 | |
| 17. Fortuna Köln | 32 | 6 | 11 | 15 | 31:48 | - 17 | 29 | |
| 18. Karlsruher SC | 32 | 5 | 11 | 16 | 34:53 | - 19 | 26 | |
Ergebnisse 1999/2000