| Mannschaft | Spiele | gew. | unent. | verl. | Tore | Torv. | Punkte | veränd. |
|---|---|---|---|---|---|---|---|---|
| 1. 1.FC Köln | 33 | 20 | 8 | 5 | 68:37 | + 31 | 65 |  |
| 2. VfL Bochum | 33 | 18 | 6 | 9 | 64:45 | + 19 | 60 | |
| 3. FC Energie Cottbus | 33 | 17 | 4 | 12 | 60:42 | + 18 | 55 | |
| 4. Borussia Mönchengladbach | 33 | 14 | 12 | 7 | 59:41 | + 18 | 54 | |
| 5. 1.FC Nürnberg | 33 | 14 | 10 | 9 | 52:45 | + 7 | 52 | |
| 6. Rot-Weiß Oberhausen | 33 | 12 | 12 | 9 | 42:33 | + 9 | 48 | |
| 7. SpVgg. Greuther Fürth | 33 | 10 | 15 | 8 | 38:37 | + 1 | 45 |  |
| 8. Alemannia Aachen | 33 | 12 | 9 | 12 | 44:52 | - 8 | 45 |  |
| 9. Hannover 96 | 33 | 12 | 7 | 14 | 53:53 | + 0 | 43 | |
| 10. FSV Mainz 05 | 33 | 10 | 12 | 11 | 40:42 | - 2 | 42 | |
| 11. Waldhof Mannheim | 33 | 9 | 13 | 11 | 50:54 | - 4 | 42 | |
| 12. Tennis Borussia Berlin | 33 | 10 | 10 | 13 | 42:49 | - 7 | 40 | |
| 13. Chemnitzer FC | 33 | 10 | 10 | 13 | 41:49 | - 8 | 40 | |
| 14. FC St.Pauli | 33 | 8 | 14 | 11 | 36:44 | - 8 | 38 | |
| 15. Stuttgarter Kickers | 33 | 10 | 8 | 15 | 48:57 | - 9 | 38 | |
| 16. Kickers Offenbach | 33 | 8 | 11 | 14 | 34:54 | - 20 | 35 | |
| 17. Fortuna Köln | 33 | 7 | 11 | 15 | 34:49 | - 15 | 32 | |
| 18. Karlsruher SC | 33 | 5 | 11 | 17 | 34:55 | - 21 | 26 | |
Ergebnisse 1999/2000