| Mannschaft | Spiele | gew. | unent. | verl. | Tore | Torv. | Punkte | veränd. |
|---|---|---|---|---|---|---|---|---|
| 1. 1.FC Köln | 34 | 20 | 8 | 6 | 68:39 | + 29 | 65 |  |
| 2. VfL Bochum | 34 | 18 | 7 | 9 | 67:48 | + 19 | 61 | |
| 3. FC Energie Cottbus | 34 | 18 | 4 | 12 | 62:42 | + 20 | 58 | |
| 4. 1.FC Nürnberg | 34 | 15 | 10 | 9 | 54:46 | + 8 | 55 |  |
| 5. Borussia Mönchengladbach | 34 | 14 | 12 | 8 | 60:43 | + 17 | 54 |  |
| 6. Rot-Weiß Oberhausen | 34 | 12 | 13 | 9 | 43:34 | + 9 | 49 | |
| 7. SpVgg. Greuther Fürth | 34 | 10 | 16 | 8 | 40:39 | + 1 | 46 | |
| 8. Alemannia Aachen | 34 | 12 | 10 | 12 | 46:54 | - 8 | 46 | |
| 9. FSV Mainz 05 | 34 | 11 | 12 | 11 | 42:42 | + 0 | 45 | |
| 10. Hannover 96 | 34 | 12 | 8 | 14 | 56:56 | + 0 | 44 | |
| 11. Chemnitzer FC | 34 | 11 | 10 | 13 | 42:49 | - 7 | 43 | |
| 12. Waldhof Mannheim | 34 | 9 | 13 | 12 | 50:56 | - 6 | 42 | |
| 13. Tennis Borussia Berlin | 34 | 10 | 10 | 14 | 42:50 | - 8 | 40 | |
| 14. FC St.Pauli | 34 | 8 | 15 | 11 | 37:45 | - 8 | 39 | |
| 15. Stuttgarter Kickers | 34 | 10 | 9 | 15 | 49:58 | - 9 | 39 | |
| 16. Fortuna Köln | 34 | 8 | 11 | 15 | 38:50 | - 12 | 35 | |
| 17. Kickers Offenbach | 34 | 8 | 11 | 15 | 35:58 | - 23 | 35 | |
| 18. Karlsruher SC | 34 | 5 | 12 | 17 | 35:56 | - 21 | 27 | |
Ergebnisse 1999/2000