| Mannschaft | Spiele | gew. | unent. | verl. | Tore | Torv. | Punkte | veränd. |
| 1. 1.FC Köln | 14 | 9 | 4 | 1 | 29:10 | + 19 | 31 |  |
| 2. FC Energie Cottbus | 14 | 9 | 1 | 4 | 31:16 | + 15 | 28 | |
| 3. 1.FC Nürnberg | 14 | 7 | 3 | 4 | 24:24 | + 0 | 24 |  |
| 4. Tennis Borussia Berlin | 14 | 5 | 7 | 2 | 22:16 | + 6 | 22 |  |
| 5. Alemannia Aachen | 14 | 6 | 4 | 4 | 25:26 | - 1 | 22 | |
| 6. Chemnitzer FC | 14 | 6 | 3 | 5 | 22:17 | + 5 | 21 | |
| 7. FSV Mainz 05 | 14 | 5 | 6 | 3 | 18:17 | + 1 | 21 | |
| 8. VfL Bochum | 14 | 6 | 2 | 6 | 23:21 | + 2 | 20 | |
| 9. Hannover 96 | 14 | 5 | 3 | 6 | 21:20 | + 1 | 18 | |
| 10. SpVgg. Greuther Fürth | 14 | 4 | 6 | 4 | 10:14 | - 4 | 18 | |
| 11. Borussia Mönchengladbach | 14 | 4 | 4 | 6 | 19:21 | - 2 | 16 | |
| 12. Waldhof Mannheim | 14 | 4 | 4 | 6 | 17:22 | - 5 | 16 | |
| 13. Stuttgarter Kickers | 14 | 4 | 4 | 6 | 21:27 | - 6 | 16 | |
| 14. FC St.Pauli | 14 | 3 | 6 | 5 | 15:18 | - 3 | 15 | |
| 15. Rot-Weiß Oberhausen | 14 | 3 | 5 | 6 | 13:18 | - 5 | 14 | |
| 16. Fortuna Köln | 14 | 3 | 5 | 6 | 11:19 | - 8 | 14 | |
| 17. Karlsruher SC | 14 | 2 | 6 | 6 | 20:24 | - 4 | 12 | |
| 18. Kickers Offenbach |
14 | 2 |
5 | 7 |
10:19 |
- 9 |
11 | |
Ergebnisse 1999/2000